Transcription Factor
CTCF
Cell Line
SK-N-SH
Description
CTCF ChIP-seq on human SK-N-SH produced by the Snyder lab
ENCODE Link
ENCSR000EIC

Files (64)

File Type Size Actions
SK-N-SH_CTCF_SC-15914_sequence_rep1_120328_MAGNUM_00142_FC64KM6_L8_pf.fastq.gz
fastq
961 MB
SK-N-SH_CTCF_SC-15914_sequence_rep2_120412_COLUMBO_00164_FC64VTN_L2_pf.fastq.gz
fastq
776 MB
ENCFF000ZQI.crop_36-2bp.bam
bam
994 MB
ENCFF000ZQL.raw.srt.bam
bam
837 MB
ENCFF000ZQL.raw.srt.filt.nodup.srt.bam
bam
530 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.bam
bam
651 MB
ENCFF000ZQI.raw.srt.bam
bam
1010 MB
ENCFF000ZQL.raw.srt.bam
bam
833 MB
ENCFF000ZQL.raw.srt.filt.nodup.srt.bam
bam
530 MB
ENCFF000ZQI.raw.srt.bam
bam
1010 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.bam
bam
652 MB
pool.pvalue_signal.bw
bigWig
572 MB
r1.fc_signal.bw
bigWig
343 MB
pool.fc_signal.bw
bigWig
555 MB
r1.pvalue_signal.bw
bigWig
458 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.gz
bed narrowPeak
4.66 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.SE-ENCFF000ZQL.raw.srt.filt.nodup.srt.SE_pooled.regionPeak.gz
bed narrowPeak
5.03 MB
ENCFF000ZQL.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
10.5 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.SE-ENCFF000ZQL.raw.srt.filt.nodup.srt.SE_pooled.fixcoord.regionPeak.bb
bigBed narrowPeak
11.3 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
797 KB
r2.fc_signal.bw
bigWig
318 MB
r2.pvalue_signal.bw
bigWig
419 MB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
863 KB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
1.51 MB
ENCFF000ZQL.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.gz
bed narrowPeak
4.3 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
1.42 MB
ENCFF000ZQI.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
10.8 MB
r1.fc_signal.bw
bigWig
344 MB
pool.pvalue_signal.bw
bigWig
572 MB
r2.pvalue_signal.bw
bigWig
421 MB
r2.fc_signal.bw
bigWig
316 MB
pool.fc_signal.bw
bigWig
554 MB
r1.pvalue_signal.bw
bigWig
429 MB
R2.fixcoord.regionPeak.gz
bed narrowPeak
4.3 MB
PL.regionPeak.gz
bed narrowPeak
5.03 MB
R1.regionPeak.gz
bed narrowPeak
4.66 MB
R1.fixcoord.regionPeak.bb
bigBed narrowPeak
10.8 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
795 KB
PL.fixcoord.regionPeak.bb
bigBed narrowPeak
11.3 MB
R2.fixcoord.regionPeak.bb
bigBed narrowPeak
10.5 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
1.42 MB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
868 KB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
1.52 MB
ENCFF000ZQL.crop_36-2bp.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
442 MB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.43 MB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.53 MB
rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.56 MB
rep.pooled_x_ctl.pooled.fc.signal.bigwig
bigWig
599 MB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
876 KB
ENCFF000ZQL.crop_36-2bp.bam
bam
819 MB
ENCFF000ZQI.crop_36-2bp.nodup.bam
bam
705 MB
rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.18 MB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
617 KB
ENCFF000ZQL.crop_36-2bp.nodup.bam
bam
576 MB
ENCFF000ZQI.crop_36-2bp.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
437 MB
ENCFF000ZQI.crop_36-2bp.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
369 MB
ENCFF000ZQL.crop_36-2bp.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
329 MB
rep.pooled_x_ctl.pooled.pval.signal.bigwig
bigWig
534 MB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
797 KB
rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
2.17 MB
pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.83 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
801 KB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.15 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.43 MB