Transcription Factor
CTCF
Cell Line
K562
Description
CTCF ChIP-seq on human K562 produced by the Snyder lab
ENCODE Link
ENCSR000EGM

Files (64)

File Type Size Actions
K562_CTCF_sequence_rep1_110513_SPADE_00074_FC70KJV_L2_pf.fastq.gz
fastq
1.16 GB
K562_CTCF_sequence_rep2_110513_SPADE_00074_FC70KJV_L3_pf.fastq.gz
fastq
1.13 GB
rep.pooled_x_ENCFF000YRB.crop_36-2bp.nodup.pval.signal.bigwig
bigWig
618 MB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.24 MB
ENCFF000YLW.raw.srt.bam
bam
1.25 GB
ENCFF000YLY.raw.srt.bam
bam
1.25 GB
ENCFF000YLW.raw.srt.filt.nodup.srt.bam
bam
835 MB
ENCFF000YLY.raw.srt.filt.nodup.srt.bam
bam
868 MB
r2.fc_signal.bw
bigWig
416 MB
ENCFF000YLY.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.gz
bed narrowPeak
4.58 MB
r2.pvalue_signal.bw
bigWig
460 MB
ENCFF000YLW.raw.srt.filt.nodup.srt.SE-ENCFF000YLY.raw.srt.filt.nodup.srt.SE_pooled.fixcoord.regionPeak.bb
bigBed narrowPeak
8.97 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
1.44 MB
r1.pvalue_signal.bw
bigWig
444 MB
pool.pvalue_signal.bw
bigWig
521 MB
r1.fc_signal.bw
bigWig
399 MB
pool.fc_signal.bw
bigWig
679 MB
ENCFF000YLW.raw.srt.filt.nodup.srt.SE.regionPeak.gz
bed narrowPeak
4.47 MB
ENCFF000YLW.raw.srt.filt.nodup.srt.SE-ENCFF000YLY.raw.srt.filt.nodup.srt.SE_pooled.fixcoord.regionPeak.gz
bed narrowPeak
4.29 MB
ENCFF000YLW.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
10.6 MB
ENCFF000YLY.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
10.5 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
850 KB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
891 KB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
1.5 MB
ENCFF000YLY.raw.srt.filt.nodup.srt.bam
bam
869 MB
ENCFF000YLY.raw.srt.bam
bam
1.24 GB
ENCFF000YLW.raw.srt.bam
bam
1.25 GB
ENCFF000YLW.raw.srt.filt.nodup.srt.bam
bam
836 MB
r2.pvalue_signal.bw
bigWig
410 MB
r1.pvalue_signal.bw
bigWig
429 MB
r1.fc_signal.bw
bigWig
399 MB
pool.pvalue_signal.bw
bigWig
555 MB
r2.fc_signal.bw
bigWig
416 MB
R2.regionPeak.gz
bed narrowPeak
4.59 MB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
1.49 MB
pool.fc_signal.bw
bigWig
694 MB
PL.regionPeak.gz
bed narrowPeak
3.99 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
846 KB
PL.fixcoord.regionPeak.bb
bigBed narrowPeak
8.27 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
1.44 MB
R1.fixcoord.regionPeak.bb
bigBed narrowPeak
10.6 MB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
884 KB
R1.regionPeak.gz
bed narrowPeak
4.47 MB
R2.fixcoord.regionPeak.bb
bigBed narrowPeak
10.6 MB
ENCFF000YLW.crop_36-2bp.bam
bam
1.23 GB
ENCFF000YLY.crop_36-2bp.nodup.bam
bam
938 MB
ENCFF000YLW.crop_36-2bp.nodup_x_ENCFF000YRB.crop_36-2bp.nodup.pval.signal.bigwig
bigWig
436 MB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
811 KB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
869 KB
ENCFF000YLY.crop_36-2bp.bam
bam
1.23 GB
ENCFF000YLY.crop_36-2bp.nodup_x_ENCFF000YRB.crop_36-2bp.nodup.pval.signal.bigwig
bigWig
483 MB
rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.72 MB
ENCFF000YLW.crop_36-2bp.nodup.bam
bam
904 MB
ENCFF000YLW.crop_36-2bp.nodup_x_ENCFF000YRB.crop_36-2bp.nodup.fc.signal.bigwig
bigWig
416 MB
rep.pooled_x_ENCFF000YRB.crop_36-2bp.nodup.fc.signal.bigwig
bigWig
705 MB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.38 MB
ENCFF000YLY.crop_36-2bp.nodup_x_ENCFF000YRB.crop_36-2bp.nodup.fc.signal.bigwig
bigWig
426 MB
rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.81 MB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
730 KB
pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
4.62 MB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
911 KB
rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
4.62 MB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.52 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
1.47 MB