Transcription Factor
CUX1
Cell Line
GM12878
Description
CUX1 ChIP-seq on human GM12878 produced by the Snyder lab
ENCODE Link
ENCSR000DYR

Files (64)

File Type Size Actions
GM12878_CDP_sequence_rep1_101018_COLUMBO_FC62TOW_L1_pf.fastq.gz
fastq
826 MB
GM12878_CDP_sequence_rep2_110127_SPADE_00053_FC6340N_L6_pf.fastq.gz
fastq
1.29 GB
ENCFF000VSS-crop.raw.srt.bam
bam
816 MB
ENCFF000VSV-crop.raw.srt.bam
bam
1.29 GB
ENCFF000VSS-crop.raw.srt.filt.nodup.srt.bam
bam
460 MB
ENCFF000VSV-crop.raw.srt.filt.nodup.srt.bam
bam
840 MB
ENCFF000VSS-crop.raw.srt.bam
bam
813 MB
ENCFF000VSV-crop.raw.srt.bam
bam
1.29 GB
ENCFF000VSS-crop.raw.srt.filt.nodup.srt.bam
bam
460 MB
ENCFF000VSV-crop.raw.srt.filt.nodup.srt.bam
bam
838 MB
r1.fc_signal.bw
bigWig
217 MB
pool.fc_signal.bw
bigWig
489 MB
R1.regionPeak.gz
bed narrowPeak
182 KB
R2.fixcoord.regionPeak.gz
bed narrowPeak
4.03 MB
R1.fixcoord.regionPeak.bb
bigBed narrowPeak
466 KB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
20.2 KB
r1.pvalue_signal.bw
bigWig
188 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
86.3 KB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
351 KB
R2.fixcoord.regionPeak.bb
bigBed narrowPeak
10.1 MB
PL.fixcoord.regionPeak.bb
bigBed narrowPeak
10.5 MB
r2.pvalue_signal.bw
bigWig
68.9 MB
pool.pvalue_signal.bw
bigWig
148 MB
r2.fc_signal.bw
bigWig
293 MB
PL.regionPeak.gz
bed narrowPeak
4.62 MB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
142 KB
PL.fixcoord.regionPeak.bb
bigBed narrowPeak
10.5 MB
R1.fixcoord.regionPeak.bb
bigBed narrowPeak
466 KB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
353 KB
pool.pvalue_signal.bw
bigWig
149 MB
R2.fixcoord.regionPeak.gz
bed narrowPeak
4.03 MB
r1.pvalue_signal.bw
bigWig
188 MB
r1.fc_signal.bw
bigWig
211 MB
R2.fixcoord.regionPeak.bb
bigBed narrowPeak
10.1 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
19.8 KB
R1.regionPeak.gz
bed narrowPeak
182 KB
PL.regionPeak.gz
bed narrowPeak
4.62 MB
r2.pvalue_signal.bw
bigWig
68.6 MB
r2.fc_signal.bw
bigWig
293 MB
pool.fc_signal.bw
bigWig
497 MB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
143 KB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
85.9 KB
ENCFF000VSS.crop_28-2bp.srt.nodup.bam
bam
485 MB
ENCFF000VSS.crop_28-2bp.srt.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
222 MB
rep.pooled_x_ctl.pooled.pval.signal.bigwig
bigWig
407 MB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
73.8 KB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
19.3 KB
ENCFF000VSV.crop_28-2bp.srt.nodup.bam
bam
898 MB
ENCFF000VSS.crop_28-2bp.srt.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
276 MB
pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.18 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
85.1 KB
ENCFF000VSS.crop_28-2bp.srt.bam
bam
785 MB
rep.pooled_x_ctl.pooled.fc.signal.bigwig
bigWig
527 MB
rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
289 KB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
134 KB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
195 KB
ENCFF000VSV.crop_28-2bp.srt.bam
bam
1.24 GB
ENCFF000VSV.crop_28-2bp.srt.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
328 MB
ENCFF000VSV.crop_28-2bp.srt.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
358 MB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
16.2 KB
rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
2.57 MB
rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
354 KB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
68.7 KB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
339 KB