ENCODE Experiment ENCSR000CDZ

Transcription Factor
CTCF
Cell Line
thymus
Description
CTCF ChIP-seq on 8-week mouse thymus
ENCODE Link
ENCSR000CDZ

Files (44)

File Type Size Actions
wgEncodeLicrTfbsThymusCtcfMAdult8wksC57bl6StdRawDataRep1.fastq.gz
fastq
244 MB
wgEncodeLicrTfbsThymusCtcfMAdult8wksC57bl6StdRawDataRep2.fastq.gz
fastq
502 MB
ENCFF001LSL.raw.srt.bam
bam
532 MB
ENCFF001LSJ.raw.srt.bam
bam
230 MB
ENCFF001LSJ.raw.srt.filt.nodup.srt.bam
bam
80.7 MB
ENCFF001LSL.raw.srt.filt.nodup.srt.bam
bam
295 MB
ENCFF001LSJ.crop_36-2bp.bam
bam
228 MB
ENCFF001LSJ.crop_36-2bp.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
240 MB
rep.pooled_x_ctl.pooled.fc.signal.bigwig
bigWig
206 MB
r1.fc_signal.bw
bigWig
43.5 MB
pool.pvalue_signal.bw
bigWig
298 MB
ENCFF001LSJ.raw.srt.filt.nodup.srt.SE-ENCFF001LSL.raw.srt.filt.nodup.srt.SE_pooled.regionPeak.gz
bed narrowPeak
5.45 MB
r1.pvalue_signal.bw
bigWig
159 MB
r2.pvalue_signal.bw
bigWig
225 MB
ENCFF001LSJ.raw.srt.filt.nodup.srt.SE.regionPeak.gz
bed narrowPeak
1.55 MB
ENCFF001LSJ.raw.srt.filt.nodup.srt.SE-ENCFF001LSL.raw.srt.filt.nodup.srt.SE_pooled.fixcoord.regionPeak.bb
bigBed narrowPeak
12.1 MB
pool.fc_signal.bw
bigWig
199 MB
IDR_final_conservative.narrowPeak.bb
bigBed narrowPeak
473 KB
r2.fc_signal.bw
bigWig
137 MB
IDR_final_optimal.narrowPeak.bb
bigBed narrowPeak
569 KB
ENCFF001LSL.raw.srt.filt.nodup.srt.SE.regionPeak.gz
bed narrowPeak
4.76 MB
ENCFF001LSJ.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
3.48 MB
IDR_final_conservative.narrowPeak.gz
bed narrowPeak
245 KB
IDR_final_optimal.narrowPeak.gz
bed narrowPeak
318 KB
ENCFF001LSL.raw.srt.filt.nodup.srt.SE.fixcoord.regionPeak.bb
bigBed narrowPeak
11.8 MB
ENCFF001LSJ.crop_36-2bp.nodup.bam
bam
84.9 MB
ENCFF001LSL.crop_36-2bp.bam
bam
525 MB
ENCFF001LSL.crop_36-2bp.nodup.bam
bam
311 MB
ENCFF001LSJ.crop_36-2bp.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
62.4 MB
ENCFF001LSL.crop_36-2bp.nodup_x_ctl.pooled.pval.signal.bigwig
bigWig
297 MB
ENCFF001LSL.crop_36-2bp.nodup_x_ctl.pooled.fc.signal.bigwig
bigWig
178 MB
rep.pooled_x_ctl.pooled.pval.signal.bigwig
bigWig
332 MB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
333 KB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
157 KB
pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
591 KB
rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
838 KB
rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
67.9 KB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
264 KB
pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
5.54 MB
rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.32 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
481 KB
rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
bed idr_ranked_peak
3.74 MB
rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
bed narrowPeak
248 KB
rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
bigBed narrowPeak
490 KB