Welcome to the Rick Myers lab transcription factor (TF) and histone ChIP-seq experiment download portal.
This site hosts TF/histone ChIP-seq data produced in several projects: ENCODE, BrainTF, and TF Continuation
ENCODE (The Encyclopedia of DNA Elements)
Searching here will return results from the ENCODE portal at encodeproject.org
Funding:
U54 HG006998/HG/NHGRI NIH
UM1 HG009411/HG/NHGRI NIH
UM1 HG009443/HG/NHGRI NIH
Myers Lab TF Continuation Project
In this ongoing project, we are continuing our ENCODE CETCh-seq production to assay additional TFs; these data are hosted here but will not be uploaded to the ENCODE portal.
Funding:
U24 HG012922/HG/NHGRI NIH
Publications
- An integrated encyclopedia of DNA elements in the human genome
- Expanded encyclopaedias of DNA elements in the human and mouse genomes
- Perspectives on ENCODE
- Occupancy maps of 208 chromatin-associated proteins in one human cell type
- Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells
BrainTF
The BrainTF project is an undertaking of the Myers lab to understand TF activity in the human brain. This dataset includes hundreds of ChIP-seq experiments examining over 100 TFs across multiple brain regions from postmortem tissues that were analyzed as homogenate samples or sorted for distinct cell-typesusing FACS.
Funding:
R01 MH110472/MH/NIMH NIH